Structure of coxsackievirus B5 capsid (mutant CVB5F.cas.genogroupB) - E particle
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 8r5z
Q-score: 0.573
Torii S, Gouttenoire J, Kumar K, Antanasijevic A, Kohn T
Environ Sci Technol. (2024) 58 pp. 5279-5289 [ DOI: doi:10.1021/acs.est.3c10409 Pubmed: 38488515 ]
- Coxsackievirus b5 (Virus from Coxsackievirus B5)
- Genome polyprotein (93 kDa, Protein from Coxsackievirus B5)
Head-to-tail double ring assembly from truncated PVY coat protein
Resolution: 2.93 Å
EM Method: Single-particle
Fitted PDBs: 8oph
Q-score: 0.474
Kavcic L, Kezar A, Koritnik N, Znidaric MT, Klobucar T, Vicic Z, Merzel F, Holden E, Benesch JLP, Podobnik M
Commun Chem (2024) 7 pp. 14-14 [ Pubmed: 38233506 DOI: doi:10.1038/s42004-024-01100-x ]
Global refinement of cubic assembly from truncated PVY coat protein with K176C mutation
Resolution: 2.99 Å
EM Method: Single-particle
Fitted PDBs: 8opj
Q-score: 0.421
Kavcic L, Kezar A, Koritnik N, Znidaric MT, Klobucar T, Vicic Z, Merzel F, Holden E, Benesch JLP, Podobnik M
Commun Chem (2024) 7 pp. 14-14 [ Pubmed: 38233506 DOI: doi:10.1038/s42004-024-01100-x ]
Local refinement of cubic assembly from truncated PVY coat protein with K176C mutation
Resolution: 3.16 Å
EM Method: Single-particle
Fitted PDBs: 8opk
Q-score: 0.428
Kavcic L, Kezar A, Koritnik N, Znidaric MT, Klobucar T, Vicic Z, Merzel F, Holden E, Benesch JLP, Podobnik M
Commun Chem (2024) 7 pp. 14-14 [ Pubmed: 38233506 DOI: doi:10.1038/s42004-024-01100-x ]
Purification of Enterovirus A71, strain 4643, WT capsid
Resolution: 8.0 Å
EM Method: Single-particle
Fitted PDBs: 8e2y
Q-score: 0.148
Catching A, Te Yeh M, Bianco S, Capponi S, Andino R
Nat Commun (2023) 14 pp. 7450-7450 [ Pubmed: 37978288 DOI: doi:10.1038/s41467-023-43029-0 ]
- Vp2 (25 kDa, Protein from Enterovirus A71)
- Vp1 (25 kDa, Protein from Enterovirus A71)
- Genome polyprotein (25 kDa, Protein from Enterovirus A71)
- Human enterovirus 71 (Virus from Human enterovirus 71)
Purification of Enterovirus A71, strain 4643, WT capsid
Resolution: 14.0 Å
EM Method: Single-particle
Fitted PDBs: 8e31
Q-score: 0.084
Catching A, Te Yeh M, Bianco S, Capponi S, Andino R
Nat Commun (2023) 14 pp. 7450-7450 [ Pubmed: 37978288 DOI: doi:10.1038/s41467-023-43029-0 ]
- Vp1 (25 kDa, Protein from Enterovirus A71)
- Vp3 (23 kDa, Protein from Enterovirus A71)
- Genome polyprotein (24 kDa, Protein from Enterovirus A71)
- Human enterovirus 71 (Virus from Human enterovirus 71)
Cryo-EM structure of the NS5-SLA complex
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8gzp
Q-score: 0.486
Osawa T, Aoki M, Ehara H, Sekine SI
Mol Cell (2023) 83 pp. 2781- [ Pubmed: 37478848 DOI: doi:10.1016/j.molcel.2023.06.023 ]
- Rna (54 kDa, RNA from synthetic construct)
- Zinc ion (65 Da, Ligand)
- Rna replicase complex bound to the mini-genome rna (Complex from Dengue virus)
- Magnesium ion (24 Da, Ligand)
- Mini-genome rna (Complex from synthetic construct)
- Ns5 (Complex from Dengue virus)
- Genome polyprotein (104 kDa, Protein from Dengue virus)
- Guanosine-5'-diphosphate (443 Da, Ligand)
Cryo-EM structure of the NS5-NS3-SLA complex
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 8gzq
Q-score: 0.429
Osawa T, Aoki M, Ehara H, Sekine SI
Mol Cell (2023) 83 pp. 2781- [ Pubmed: 37478848 DOI: doi:10.1016/j.molcel.2023.06.023 ]
- Ns3 (Complex from Dengue virus)
- Genome polyprotein (74 kDa, Protein from Dengue virus)
- Rna (54 kDa, RNA from synthetic construct)
- Zinc ion (65 Da, Ligand)
- Rna replicase complex bound to the mini-genome rna (Complex from Dengue virus)
- Mini-genome rna (Complex from synthetic construct)
- Ns5 (Complex from Dengue virus)
- Genome polyprotein (104 kDa, Protein from Dengue virus)
- Guanosine-5'-diphosphate (443 Da, Ligand)
Cryo-EM structure of the the NS5-NS3 RNA-elongation complex
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 8gzr
Q-score: 0.638
Osawa T, Aoki M, Ehara H, Sekine SI
Mol Cell (2023) 83 pp. 2781- [ Pubmed: 37478848 DOI: doi:10.1016/j.molcel.2023.06.023 ]
- Ns3 (Complex from Dengue virus)
- Ns5-ns3 rna-elongation complex (Complex from Dengue virus)
- Genome polyprotein (74 kDa, Protein from Dengue virus)
- Rna (12 kDa, RNA from synthetic construct)
- Zinc ion (65 Da, Ligand)
- S-adenosyl-l-homocysteine (384 Da, Ligand)
- Rna (Complex from synthetic construct)
- Manganese (ii) ion (54 Da, Ligand)
- Ns5 (Complex from Dengue virus)
- Genome polyprotein (104 kDa, Protein from Dengue virus)
- Cytidine-5'-diphosphate (403 Da, Ligand)
Resolution: 2.4 Å
EM Method: Single-particle
Fitted PDBs: 8c6d
Q-score: 0.614
Kingston NJ, Snowden JS, Martyna A, Shegdar M, Grehan K, Tedcastle A, Pegg E, Fox H, Macadam AJ, Martin J, Hogle JM, Rowlands DJ, Stonehouse NJ
bioRxiv (2023) [ DOI: doi:10.1101/2023.01.30.526315 Pubmed: 36778240 ]
- (2s,3r,4e)-2-aminooctadec-4-ene-1,3-diol (299 Da, Ligand)
- Genome polyprotein (fragment) (35 kDa, Protein from Enterovirus A71)
- Genome polyprotein (32 kDa, Protein from Enterovirus A71)
- Enterovirus a71 (Virus from Enterovirus A71)
- Genome polyprotein (26 kDa, Protein from Enterovirus A71)